I am a researcher working on biogeography, biological invasions, and computational modelling. I'm currently an Assistant Professor at the University of Lisbon and integrated researcher at the Centre for Geographic Studies.
My main research interests revolve largely around understanding how human-mediated dispersal of species is changing the distribution of life on Earth. I'm also very interested in the spatial and temporal modelling of ecological and biological phenomena relevant to conservation, biodiversity monitoring and epidemiology. I usually tackle these topics using state-of-the-art machine learning and AI techniques and multiples types of data, from spatial global datasets to unstructured information and citizen science observations.
Keywords: Biogeographical Change | Biological Invasions | Global Change | Macroecology | Predictive Modelling | Machine Learning and AI
>You can find me with my group of great researchers and students (and perhaps more up-to-date information) at BIOCHANGE.PT;
>Also as Senior Editor @ Diversity and Distributions, on ResearchGate and at Google Scholar;
>At my institution: CEG-IGOT, UL.
>You can reach me directly at: cesarcapinha(_at_)edu.ulisboa.pt
>My Main Scientific Discoveries are also listed below.
My main research interests revolve largely around understanding how human-mediated dispersal of species is changing the distribution of life on Earth. I'm also very interested in the spatial and temporal modelling of ecological and biological phenomena relevant to conservation, biodiversity monitoring and epidemiology. I usually tackle these topics using state-of-the-art machine learning and AI techniques and multiples types of data, from spatial global datasets to unstructured information and citizen science observations.
Keywords: Biogeographical Change | Biological Invasions | Global Change | Macroecology | Predictive Modelling | Machine Learning and AI
>You can find me with my group of great researchers and students (and perhaps more up-to-date information) at BIOCHANGE.PT;
>Also as Senior Editor @ Diversity and Distributions, on ResearchGate and at Google Scholar;
>At my institution: CEG-IGOT, UL.
>You can reach me directly at: cesarcapinha(_at_)edu.ulisboa.pt
>My Main Scientific Discoveries are also listed below.
NEWS:
- 2026.03: New publication showing that news and social media can generate substantial gains in biogeographic data but also introduce pronounced spatial biases.
- 2026.02: New publication in Nature Reviews Biodiversity presenting a roadmap for a scalable architecture for biodiversity monitoring in Europe.
- 2025.11: Portuguese Atlas of Invasive Alien Plants is now published at NeoBiota journal.
- 2025.10: Editorial piece on guidelines for researchers to minimize geopolitical sensitivities.
- 2025.10: We have just published a global assessment of the invasion patterns and dynamics of mosquito species that transmit human diseases in Nature Communications.
- 2025.09: Just published in Diversity and Distributions a nice collaborative effort providing a comprehensive assessment of non-native species in the Iberian Peninsula.
- 2025.08: The most comprehensive review to date on geographic distributions, long-term trends, and data gaps of biological invasions worldwide just published.
- 2025.07: Policies are slowing biological invasions in Europe.
- 2025.06: Paper out comparing potential and observed ranges of introduced mammals in Europe.
- 2025.06: Editorial paper with suggestions on the sustainable use of LLMs.
- 2025.04: Opinion paper on Typology of the ecological impacts of biological invasions just out on TREE.
- 2025.03: Paper out that identifies the temporal patterns and drivers of biodiversity recording by citizen scientists.
- 2025.03: Paper assessing the global distribution patterns of alien vertebrate richness in mountains out in Nature Communications.
- 2025.01: Paper providing a harmonized database of global-scale raster files representing multiple threats to terrestrial species and ecosystems.
- 2024.11: Paper out on short-term forecasts of species phenological stages to inform field detection. The forecasts described are also available in real-time at natureforecast.org.
- 2024.09: Nice to be among the Stanford/Elsevier's Top 2% Scientist Rankings for 2024.
- 2024.09: Happy to have presented a keynote talk entitled 'Insights, Challenges, and Opportunities in the Global Mapping of Biological Invasions' at NEOBIOTA 2024.
- 2024.08: Paper in Ecological Informatics showing that LLMs, such as ChatGPT, can be very useful to interpret and extract ecological information from text data.
- 2024.07: GCB publication showing that regional invasion history and land use shape the prevalence of non‐native species in local assemblages.
- 2024.07: Paper out led by master student Iúri Diogo on the risk of invasion by broadleaf watermilfoil in mainland Portugal.
- 2024.07: Paper out from the EuropaBON consortia on the user and policy needs for biodiversity monitoring in Europe.
- 2024.06: New work providing a machine learning workflow to use citizen science data for modelling the timing of ecological phenomena across regions.
- 2024.05: Publication assessing the potential distribution, observed impacts, and invasion risk of two problematic non-native snapping turtles.
- 024.04: Happy to be listed as one of 'Best Ecology and Evolution Scientists in Portugal'.
- 2024.02: Publication out on economic costs of invasion in urban areas.
- 2024.01: New work examining land-use pressures on Iberian peatlands.
- 2023.12: Two new works on Journal of Biogeography, addressing the potential sources of time lags in species. distribution models and the global biogeography of alien fungus pathogens.
- 023.09: New work giving statistical estimates of time to arrival of the Tiger mosquito to yet, uninvaded, countries.
- 2023.08: New paper showing how deep learning can be applied to predict classes of disease vector abundances in response to weather and temporal variation.
- 2023.07: New work on changes in macrobenthic biodiversity associated to mangrove afforestation.
- 2023.06: New publication reporting the negative and positive impacts of non-native macrofungi (aka mushrooms) worldwide.
- 2023.05: Non-native species distribution reporting exhibits significant variation in terms of data provision, data delivery structures, and terminology usage. New paper.
- 2023.04: New work relating land use with the incidence and richness of non-native species at local scales out in Nature Communications.
- 2023.02: Happy (and surprised) to have been nominated full member of the Sigma Xi Scientific Research Honor Society. This nomination aims to distinguish researchers who have "noteworthy achievements in the fields of pure or natural sciences."
- 2023.01: New work in PNAS uncovering the global-scale networks of spread of alien species.
- 2022.09: New work assessing the current and future potential distribution of Aedes aegypti on Madeira Island.
- 2022.09: Started a new position as Ass. Professor at the University of Lisbon.
- 2022.08: New publication assessing the patterns and drivers of the worldwide distribution of non-native mushrooms.
- 2022.08: New publication measuring and assessing the global economic costs of non-native herpetofauna. [Coverage in The Conversation]
- 2022.07: Cool new work assessing the risk of invasion of traded birds worldwide, mainly psittacines, out on Global Change Biology.
- 2022.06: New paper where we assess the drivers and magnitude of alien species on the diversity and biogeography of grasslands in South America.
- 2022.04: Global economic costs of invasive invertebrate species measured and examined in a new publication.
- 2022.03: One paper exploring the effects of geo-political shifts on global wildlife trade published on BioScience and other assessing and predicting the distribution of riparian invasive plants in continental Portugal on Frontiers in Ecology and Evolution.
- 2022.01: Online piece about the invasive alien mosquito Aedes albopictus.
- 2021.11: A review paper on invasive alien mammal species in Europe published in Mammal Review.
- 2021.08: Three publications adressing the economic impacts of alien species in Europe, the Mediterranean region and in Central and South America. [Press coverage on Phys.org]
- 2021.04: Paper with accounts of the global economic costs of aquatic invasive species. [Coverage on Phys.org]
- 2021.04: Paper on a major database of economic costs of biological invasions collected from non-english sources.
- 2021.02: Paper published on the use for Deep learning for automated classification of temporal data.
- 2020.12: Paper accepted on the detailed distribution of alien terrestrial vertebrates across the Iberian Peninsula.
- 2020.10: Honored to join Diversity and Distributions as Associated Editor.
- 2020.10: Paper projecting the numbers of alien species for 2050. [Coverage from The Telegraph and EurekAlert! ]
- 2020.08: Call for applications: PhD scholarship on biological invasions & modelling & disease vectors .
- 2020.07: Paper on the drivers of future alien species impacts. [Media coverage from The Guardian]
- 2020.06: Paper on the application of machine learning for prediction of dengue importation.
- 2020.05: Paper published on the biogeographical globalization of insular herpetofaunas.
- 2020.04: Data paper presenting a database of the distribution of alien macrofungi published online in open access.
- 2019.12: New paper on the drivers of compositional dissimilarity for native and alien birds in urban areas online in Biological Invasions.
- 2019.11: Meet me at the awesome InvaCost meeting in Paris.
- 2019.10: New paper on the global potential distribution of Procambarus clarkii and Pacifastacus leniusculus.
- 2019.10: New paper on the distribution of Austropotamobius pallipes in France.
- 2019.08: Presented communication "The role of biological invasions in biotic homogenization" at EEF 2019 | 15th EEF – European Ecological Federation Congress.
- 2019.05: Joined CEG-IGOT at the University of Lisbon as FCT researcher (equiv. assistant professor).
- 2019.04: New paper on how to predict the temporal variation of ecological phenomena using discrete event data.
MAIN SCIENTIFIC DISCOVERIES
2025. In a work published in Nature Communications, we presented the first comprehensive global assessment of the invasion history and spread dynamics of mosquito species that transmit human diseases. Drawing on nearly 700 first records across 288 regions, we found that 45 mosquito species, about a quarter of all known human disease vectors, have been introduced beyond their native ranges, and that introductions have accelerated sharply since the 1950s. We also found that, while early invasions were dominated by African species, more recent introductions are primarily of Asian origin, with North America, Europe, and Australia as main recipients. Socioeconomic factors, particularly GDP, population size, and insularity, are key predictors of introduction and establishment hotspots, underscoring the role of global trade and transportation networks in shaping mosquito spread. The study provides a foundation for anticipating future invasions and managing emerging vector-borne disease risks worldwide.
[Role: Senior Author].
[Role: Senior Author].
2023. In a work published in PNAS, we mapped the global network of how alien species have spread over time. Using a dataset of first‐record dates for alien species across birds, nonmarine fishes, insects, and vascular plants, we detected consistent “hub” countries that tend to be early 'adopters' of non-native species, from which spread radiates outward. The global spread network thus has two tiers: a backbone of key dispersal hubs driving long‐distance, intercontinental movement, and a secondary layer of local radiative spread to nearby countries. We found that geographical proximity, climatic similarity, and trade volume strongly predict which countries share alien species and the timing of their first records. These results suggest that strategic targeting of hub countries could create cascading effects to slow global spread, and that monitoring hubs may serve as early warning sites for future invasions. [Role: First Author].
2021/2022. In two companion works published in Diversity and Distributions and Biodiversity Data Journal, we performed the first global overview of the diversity and biogeographical patterns of introduced macrofungi (aka mushrooms). The initial work introduced a comprehensive database documenting the worldwide distribution of nearly 650 (!) introduced macrofungal species and their dates of first recording in the non-native regions. Building on this dataset, we found that regions with higher economic development, larger land area, and milder climates host the greatest richness of alien fungi. We also found that regions with similar temperatures or latitudes tend to share more introduced species, indicating a strong climatic signal in their establishment patterns. Together, these studies highlight a very high diversity of non-native macrofungi already existing worldwide and how socioeconomic and environmental factors jointly shape their spread and establishment. [Role: Senior Author].
2020. In a work published in Global Ecology and Biogeography, we showed that human activities are profoundly reshaping the biogeography of amphibians and reptiles on islands worldwide. Drawing on historical (pre-15th century) and contemporary species distribution data, we found that species numbers have risen sharply in most islands, with introductions far exceeding extinctions. We also found that these changes (extinctions plus introductions) are driving marked biotic convergence between island groups that once held distinct faunas, with striking compositional similarities now emerging even between archipelagos in distinct oceans, such as the Caribbean, Indian, and the Pacific. Island communities that evolved in isolation are now increasingly defined by shared assemblages of widespread human-introduced species. A clear example of how human activity is reshaping fundamental biogeographical patterns.[Role: First author].
2018. In a study published in PNAS, we found that more isolated islands tend to host higher numbers of established introduced species across multiple taxonomic groups, including plants, ants, mammals, and reptiles, whereas native species decline with increasing isolation. For several groups, particularly ants, mammals, and reptiles, these human-mediated introductions have already substantially weakened or even erased one of the core predictions of island biogeography theory: the expected negative relationship between isolation and species richness. In other words, human-driven species introductions are effectively counteracting the natural decline in diversity caused by island isolation. [Role: Co-author].
2017. In a work published in Nature Communications in 2017, we examined the global tempo of alien species introductions over the past ~200 years. Using a database of >45 000 first records representing Z15,000 established introduced species, we showed that the annual rate of new introductions recorded has continued to rise, with no evidence of slowing or saturation. About 37% of all first records occurred in the period 1970–2014. We further found that variation among taxonomic groups and continents reflects historical colonial expansion (especially European diaspora) and increasing trade in the 20th century. In most groups, the accumulation of introduced species is accelerating rather than decelerating. These findings underscore that past control efforts have not kept pace with globalization, and that species introductions are likely to continue rising globally. [Role: Co-author].
2017. In a work published in Diversity and Distributions, we presented the first global assessment of the diversity and biogeographical patterns of established introduced amphibians and reptiles. Using a comprehensive dataset covering 359 regions worldwide, we found that nearly 200 reptile and 80 amphibian species have already formed self-sustaining populations outside their native ranges. The distribution of these species is strongly linked to insularity, climatic heterogeneity, and socioeconomic development, with islands and economically developed regions supporting the highest numbers of established species. Patterns of species exchange revealed that amphibian introductions are mainly concentrated within the Americas and Europe, whereas reptile introductions occur on a truly global scale. These findings provide the first harmonized, quantitative understanding of how human-mediated dispersal is reshaping the global biogeography of amphibians and reptiles. [Role: First author].
2015. In a work published in Science, we showed that human-mediated species redistributions can create global patterns of compositional similarity that are shaped more by climate than by natural dispersal barriers or evolutionary history. Using distribution data for human-introduced terrestrial gastropods worldwide, we found that species which once defined traditional zoogeographical regions (such as the Nearctic, Palearctic, Neotropical) now form regions that correspond more closely to major climate zones. A particularly clear division emerges between (sub)tropical and temperate regions, with temperate areas in different hemispheres often sharing more species with each other than with neighbouring tropical regions. These results point to an emerging, climate-driven form of biogeographical regionalization that may become increasingly prevalent as human activities continue to liberate species from species natural dispersal barriers worldwide. [Role: First author].